| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 3810 |
| Andaman Sea | Sea/Bay/Gulf | native | 5736 |
| Arabian Sea | Sea/Bay/Gulf | native | 3810 |
| Bay of Bengal | Sea/Bay/Gulf | native | 3810 |
| Gulf of Aden | Sea/Bay/Gulf | native | 3810 |
| Gulf of Oman | Sea/Bay/Gulf | native | 3810 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 3810 |
| Indian Ocean | Sea/Bay/Gulf | native | 3810 |
| Indonesian Sea | Sea/Bay/Gulf | native | 3810 |
| North Australian Shelf | Sea/Bay/Gulf | native | 3810 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 3810 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 3810 |
| Pacific Ocean | Sea/Bay/Gulf | native | 3810 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 3810 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45674 |
| Shiliao River | River (basin) | native | 36073 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3810 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 3810 |
| Verde Island Passage | Sea/Bay/Gulf | native | 107853 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |