| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 5736 |
| Atulayan Bay | Sea/Bay/Gulf | native | 41469 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5736 |
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 10988 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 9843 |
| Indian Ocean | Sea/Bay/Gulf | native | 9843 |
| Indonesian Sea | Sea/Bay/Gulf | native | 9843 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Laguna de Bay | Lake | native | 13446 |
| North Australian Shelf | Sea/Bay/Gulf | native | 10988 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 10988 |
| Pacific Ocean | Sea/Bay/Gulf | native | 10988 |
| Persian Gulf | Sea/Bay/Gulf | native | 11441 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46240 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 2858 |
| Taal Lake | Lake | native | 13446 |