| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 5736 |
| Bay of Bengal | Sea/Bay/Gulf | native | 3414 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 7300 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| East China Sea | Sea/Bay/Gulf | native | 5403 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 7300 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 3414 |
| Indian Ocean | Sea/Bay/Gulf | native | 5403 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| Jumeau West Seamount | Seamount | native | 50734 |
| Kaimon Maru Seamount | Seamount | native | 50734 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 7300 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Ragay Gulf | Sea/Bay/Gulf | native | 38601 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Sea of Japan | Sea/Bay/Gulf | native | 559 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| South West Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 2858 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Yellow Sea | Sea/Bay/Gulf | native | 3414 |