| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Arabian Sea | Sea/Bay/Gulf | native | 2872 |
| Atulayan Bay | Sea/Bay/Gulf | native | 41469 |
| Gulf of Oman | Sea/Bay/Gulf | native | 11441 |
| Indian Ocean | Sea/Bay/Gulf | native | 3412 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 45291 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104679 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 38544 |
| Pacific Ocean | Sea/Bay/Gulf | native | 28618 |
| Peng-hu Island | Sea/Bay/Gulf | questionable | 48451 |
| Persian Gulf | Sea/Bay/Gulf | native | 11441 |
| Ragay Gulf | Sea/Bay/Gulf | native | 38601 |
| Ruerhmen River | River (basin) | native | 36073 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45161 |
| Shiliao River | River (basin) | native | 36073 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 31740 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 5756 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 393 |