| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 55 |
| Bay of Bengal | Sea/Bay/Gulf | native | 55 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 55 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 9187 |
| Gulf of Aden | Sea/Bay/Gulf | native | 5450 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 55 |
| Indian Ocean | Sea/Bay/Gulf | native | 9187 |
| Indonesian Sea | Sea/Bay/Gulf | native | 55 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104679 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 55 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 55 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 55 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 55 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45334 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 10558 |
| Tawi tawi Bay | Sea/Bay/Gulf | native | 59110 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| Tung-hsiao | Sea/Bay/Gulf | native | 43510 |
| Ulugan Bay | Sea/Bay/Gulf | native | 43468 |
| Verde Island Passage | Sea/Bay/Gulf | native | 107853 |
| Yellow Sea | Sea/Bay/Gulf | native | 55 |