| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 55 |
| Arabian Sea | Sea/Bay/Gulf | native | 55 |
| Atulayan Bay | Sea/Bay/Gulf | native | 41469 |
| Bay of Bengal | Sea/Bay/Gulf | native | 55 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 55 |
| Davao Gulf | Sea/Bay/Gulf | native | 43437 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 6390 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 55 |
| Gulf of Aden | Sea/Bay/Gulf | native | 5450 |
| Gulf of Oman | Sea/Bay/Gulf | native | 55 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 55 |
| Indian Ocean | Sea/Bay/Gulf | native | 55 |
| Indonesian Sea | Sea/Bay/Gulf | native | 55 |
| Kuroshio Current | Sea/Bay/Gulf | native | 55 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104679 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| North Australian Shelf | Sea/Bay/Gulf | native | 6390 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 6390 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 6390 |
| Pacific Ocean | Sea/Bay/Gulf | native | 6390 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 55 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| Red Sea | Sea/Bay/Gulf | misidentification | 84159 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45161 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Sogod Bay | Sea/Bay/Gulf | native | 31411 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 42419 |
| Taal Lake | Lake | native | 13446 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| Yellow Sea | Sea/Bay/Gulf | native | 55 |