| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Chiku River | River (basin) | native | 36073 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Erhjen River | River (basin) | native | 36073 |
| Kaoping River | River (basin) | native | 36073 |
| Pacific Ocean | Sea/Bay/Gulf | native | 2115 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Ruerhmen River | River (basin) | native | 36073 |
| Shiliao River | River (basin) | native | 36073 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Tanshui River | River (basin) | native | 36073 |
| Tsengwen River | River (basin) | native | 36073 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |